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New Scientific Report -
Dr. Ivins May Be Innocent

From  Patricia Doyle, PhD
2-17-11
 
Hello Jeff - The FBI hounded Dr. Ivins to his death and for what? Now, the scientific report finds the so-called 'evidence' against Dr. Ivins is not definitive. This means the feds will be seeking out a new candidate for "Public Enemy #1" .... the anthrax attacker.   
 
I hope the FBI has learned its lesson and will not persecute a person of interest. Dr. Ivins was a bit quirky but that did not mean he was the anthrax attacker.  
 
Please do check out the links at the bottom of the report, such as
http://www.newscientist.com/blogs/shortsharpscience/
2011/02/who-was-the-anthrax-attacker-s.html
 
Patty
 
Date: Tue 15 Feb 2011
Source: National Research Council (NRC) of the National Academies,
The National Academies Press [edited]
http://www.nap.edu/catalog.php?record_id=13098
 
Copies may be purchased from that site. There is also the recording there of the 65-minute 15 Feb 2011 press meeting. - Mod.MHJ
 
Review of the scientific approaches used during the FBI's investigation of the 2001 anthrax letters
 
 
Summary of Committee findings
 
Major finding: it is not possible to reach a definitive conclusion about the origins of the _Bacillus anthracis_ in the mailings based on the available scientific evidence alone.
 
S.1: The _B. anthracis_ in the letters was the Ames strain and was not genetically engineered.
 
S.2: Multiple distinct colony morphological types, or morphotypes, of _B. anthracis_ Ames were present in the letters. Molecular assays of specific genetic sequences associated with these morphotypes provided an approach to determining relationships among evidentiary samples.
 
S.3: The FBI created a repository of Ames strain _B. anthracis_ samples and performed experiments to determine relationships among the letter materials and the repository samples. The scientific link between the letter material and flask number RMR-1029 is not as conclusive as stated in the DOJ [Department of Justice] Investigative Summary.
 
S.4: Silicon was present in the letter powders but there was no evidence of intentional addition of silicon-based dispersants.
 
S.5: It is difficult to draw conclusions about the amount of time needed to prepare the spore material or the skill set required of the perpetrator.
 
S.6: Physicochemical and radiological experiments were properly conducted to evaluate the samples for potential signatures connecting them to a source but proved to be of limited forensic value.
 
S.7: There was inconsistent evidence of _B. anthracis_ Ames DNA in environmental samples that were collected from an overseas site. (Finding 3.4)
 
S.8: There are other tools, methods, and approaches available today for a scientific investigation like this one.
 
S.9: Organizational structure and oversight are critical aspects of a scientific investigation. The FBI generated an organizational structure to accommodate the complexity of this case and received the advice of prominent experts.
 
S.10: A review should be conducted of the classified materials that are relevant to the FBI's investigation of the 2001 _B. anthracis_ mailings, including all of the data and material pertaining to the overseas environmental sample collections. (Recommendation 3.1)
 
S.11: The goals of forensic science and realistic expectations and limitations regarding its use in the investigation of a biological attack must be communicated to the public and policymakers with as much clarity and detail as possible before, during, and after the investigation. (Recommendation 3.2)
 
Findings and recommendations ---------------------------- Finding 3.1: Over the course of the investigation, the FBI found and engaged highly qualified experts in some areas. It benefited from the unprecedented guidance of a high level group of agency directors and leading scientists. The members of this group had top secret national security clearances, met regularly over several years in a secure facility, and dealt with classified materials. The NRC committee authoring this report, in keeping with a commitment to make this report available to the public, did not see these materials.
 
Finding 3.2: A clear organizational structure and process to oversee the entire scientific investigation was not in place in 2001. In 2003, the FBI created a new organizational unit (the Chemical, Biological, Radiological, and Nuclear [CBRN] Sciences Unit, sometimes referred to as the Chemical Biological Science Unit, or CBSU) devoted to the investigation of chemical, biological, radiological, and nuclear attacks. The formation of this new unit with clearer lines of authority is commendable.
 
Finding 3.3: Investigators used reasonable approaches in the early phase of the investigation to collect clinical and environmental samples and to apply traditional microbiological methods to their analyses. Yet during subsequent years, the investigators did not fully exploit molecular methods to identify and characterize _B. anthracis_ directly in crime scene environmental samples (without cultivation). Molecular methods offer greater sensitivity and breadth of microbial detection and more precise identification of microbial species and strains than do culture-based methods.
 
Finding 3.4: There was inconsistent evidence of _B. anthracis_ Ames DNA in environmental samples that were collected from an overseas site.
 
Finding 3.5: As was done in the anthrax investigation, at the outset of any future investigation the responsible agencies will be aided by a scientific plan and decision tree that takes into account the breadth of available physical and chemical analytical methods. The plan will also need to allow for possible modification of existing methods and for the development and validation of new methods (see Chapter 4, Section 12).
 
***Recommendation 3.1: A review should be conducted of the classified materials that are relevant to the FBI's investigation of the 2001 _B. anthracis_ mailings, including all of the data and material pertaining to the overseas environmental sample collections.
 
***Recommendation 3.2: The goals of forensic science and realistic expectations and limitations regarding its use in the investigation of a biological attack must be communicated to the public and policymakers with as much clarity and detail as possible before, during, and after the investigation.
 
Finding 4.1: The committee finds no scientific basis on which to accurately estimate the amount of time or the specific skill set needed to prepare the spore material contained in the letters. The time might vary from as little as 2 to 3 days to as much as several months. Given uncertainty about the methods used for preparation of the spore material, the committee could reach no significant conclusions regarding the skill set of the perpetrator.
 
Finding 4.2: The physicochemical methods used primarily by outside contractors early in the investigation were conducted properly.
 
Finding 4.3: Although significant amounts of silicon were found in the powders from the New York Post, Daschle, and Leahy letters, no silicon was detected on the outside surface of spores where a dispersant would reside. Instead, significant amounts of silicon were detected within the spore coats of some samples. The bulk silicon content in the Leahy letter matched the silicon content per spore measured by different techniques. For the New York Post letter, however, there was a substantial difference between the amount of silicon measured in bulk and that measured in individual spores. No compelling explanation for this difference was provided to the committee.
 
Finding 4.4: Surrogate preparations of _B. anthracis_ did reproduce physical characteristics (purity, spore concentration, dispersibility) of the letter samples, but did not reproduce the large amount of silicon found in the coats of letter sample spores. [The committee appears to have ignored how these significantly high levels of silicon within the spore coat were achieved ... usually ascribed to the use of silanes ... and thus where such a technical skill could be found. - Mod.MHJ]
 
Finding 4.5: Radiocarbon dating of the Leahy letter material indicates that it was produced after 1998.
 
Finding 4.6: The flask designated RMR-1029 was not the immediate, most proximate source of the letter material. If the letter material did in fact derive from RMR-1029, then one or more separate growth steps, using seed material from RMR-1029 followed by purification, would have been necessary. Furthermore, the evidentiary material in the New York letters had physical properties that were distinct from those of the material in the Washington, DC letters.
 
(Specifically) SEM-EDX measurements showed no silicon in the coats of spores taken directly from RMR-1029, whereas the majority of spores analyzed from the New York Post, Daschle, and Leahy letter materials contained silicon in the coat. Based on recent studies of the mechanism of silicon incorporation, silicon could have been incorporated in the coats of the letter spores only if spores from RMR-1029 were subjected to one or more subsequent growth steps. Another observation consistent with a separate growth step was the detection of _B. subtilis_ in the New York Post and Brokaw letter material but not in RMR-1029 (discussed in Chapter 5). The detection of meglumine and diatrizoate in RMR-1029 but not in the Leahy and New York Post samples also is consistent with this finding; however, it is not conclusive because it might have been possible to rinse these impurities away without requiring later growth. Some of these findings, as well as others, indicate that the New York letter materials were prepared separately from the materials in the Washington, DC, letters. The presence of _B. subtilis_ in the New York but not the Washington letter materials and the different physical properties of the materials indicate that the 2 sets of letter materials were prepared separately.
 
Finding 5.1: The dominant organism found in the letters was correctly and efficiently identified as the Ames strain of _B. anthracis_. The science performed on behalf of the FBI for the purpose of _Bacillus_ species and _B. anthracis_ strain identification was appropriate, properly executed, and reflected the contemporary state of the art.
 
Finding 5.2: The initial assessment of whether the _B. anthracis_ Ames strain in the letters had undergone deliberate genetic engineering or modification was timely and appropriate, though necessarily incomplete. The genome sequences of the letter isolates that became available later in the investigation strongly supported the FBI's conclusion that the attack materials had not been genetically engineered.
 
Finding 5.3: A distinct _Bacillus_ species, _B. subtilis_, was a minor constituent of the New York Post and Brokaw (New York) letters, and the strain found in these 2 letters was probably the same. _B. subtilis_ was not present in the Daschle and Leahy letters. The FBI investigated this constituent of the New York letters and concluded, and the committee concurs, that the _B. subtilis_ contaminant did not provide useful forensic information. While this contaminant did not provide useful forensic information in this case, the committee recognizes that such biological contaminants could prove to be of forensic value in future cases and should be investigated to their fullest. [The FBI downplayed their failure to identify a possible source for this contaminant, a species frequently used as a stimulant and therefore a potential institutional fingerprint as to where one set of spores were cultured. - Mod.MHJ]
 
Finding 5.4: Multiple colony morphotypes of _B. anthracis_ Ames were present in the material in each of the 3 letters that were examined (New York Post, Leahy, and Daschle), and each of the phenotypic morphotypes was found to represent one or more distinct genotypes.
 
Finding 5.5: Specific molecular assays were developed for some of the _B. anthracis_ Ames genotypes (those designated A1, A3, D, and E) found in the letters. These assays provided a useful approach for assessing possible relationships among the populations of _B. anthracis_ spores in the letters and in samples that were subsequently collected for the FBI Repository (see also Chapter 6). However, more could have been done to determine the performance characteristics of these assays. In addition, the assays did not measure the relative abundance of the variant morphotype mutations, which might have been valuable and could be important in future investigations.
 
Finding 5.6: The development and validation of the variant morphotype mutation assays took a long time and slowed the investigation. The committee recognizes that the genomic science used to analyze the forensic markers identified in the colony morphotypes was a large-scale endeavor and required the application of emerging science and technology. Although the committee lauds and supports the effort dedicated to the development of well-validated assays and procedures, looking toward the future, these processes need to be more efficient.
 
Finding 6.1: The FBI appropriately decided to establish a repository of samples of the Ames strain of _B. anthracis_ then held in various laboratories around the world. The repository samples would be compared with the material found in the letters to determine whether they might be the source of the letter materials. However, for a variety of reasons, the repository was not optimal. For example, the instructions provided in the subpoena issued to laboratories for preparing samples (that is, the "subpoena protocol") were not precise enough to ensure that the laboratories would follow a consistent procedure for producing samples that would be most suitable for later comparisons. Such problems with the repository required additional investigation and limit the strength of the conclusions that can be drawn from comparisons of these samples and the letter material.
 
Finding 6.2: The results of the genetic analyses of the repository samples were consistent with the finding that the spores in the attack letters were derived from RMR-1029, but the analyses did not definitively demonstrate such a relationship.
 
Finding 6.3: Some of the mutations identified in the spores of the attack letters and detected in RMR-1029 might have arisen by parallel evolution rather than by derivation from RMR-1029. This possible explanation of genetic similarity between spores in the letters and in RMR-1029 was not rigorously explored during the course of the investigation, further complicating the interpretation of the apparent association between the _B. anthracis_ genotypes discovered in the attack letters and those found in RMR-1029.
 
Finding 6.4: The genetic evidence that a disputed sample submitted by the suspect came from a source other than RMR-1029 was weaker than stated in the Department of Justice, Amerithrax Investigative Summary.
 
Finding 6.5: The scientific data generated by and on behalf of the FBI provided leads as to a possible source of the anthrax spores found in the attack letters, but these data alone did not rule out other sources.
 
Finding 6.6: Point mutations should have been used in the screening of evidentiary samples.
 
Finding 6.7: Biological material from all 4 letters should have been examined to determine whether they each contained all 4 genetic markers used in screening the repository samples.
 
Finding 6.8: New scientific tools, methods, and insight relevant to this investigation became available during its later years. An important example is high-throughput "next-generation" DNA sequencing. The application of these tools, methods, and insight might clarify (strengthen or weaken) the inference of an association between RMR-1029 and the spores in the attack letters. Such approaches will be important for use in future cases.
 
Finding 6.9: The FBI faced a difficult challenge in assembling and annotating the repository of _B. anthracis_ Ames samples collected for genetic analysis.
 
Finding 6.10: The evidentiary material from this case is, and will be, immensely valuable, especially in the event of future work on either this case or other cases involving biological terrorism or warfare. It is critically important to continue to preserve all remaining evidentiary material and samples collected during the course of this (the anthrax letters investigation) and future investigations, including the overseas environmental samples, for possible additional studies.
--
Communicated by:
ProMED-mail
promed@promedmail.org
 
In a word, the scientific evidence at this time does not validate
the FBI conclusions based on their circumstantial evidence and in fact
casts a wider net. For additional comments see
 
http://www.newscientist.com/blogs/shortsharpscience/2011/02/who-was-the-anthrax-attacker-s.html
 
http://news.sciencemag.org/scienceinsider/2011/02/study-questions-government-case-.html?etoc
 
http://www.foxnews.com/politics/2011/02/15/panel-releasing-
review-science-fbi-anthrax-probe/#ixzz1E4ZmvwhR
 
and
 
http://www.fbi.gov/news/pressrel/press-releases/fbi-and-justice-department-response-to-nas-
review-of-scientific-approaches-used-during-the-investigation-of-the-2001-anthrax-letters
 
- Mod.MHJ
 
 
Patricia A. Doyle DVM, PhD Bus Admin, Tropical Agricultural Economics Univ of West Indies Please visit my "Emerging Diseases" message board at:http://www.emergingdisease.org/phpbb/index.php Also my new website: http://drpdoyle.tripod.com/ Zhan le Devlesa tai sastimasa Go with God and in Good Health
 
Benjamin Franklin said, "They that 
can give up essential liberty to obtain a little temporary safety deserve 
neither liberty nor safety." 
 
  
 
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